The purpose of this document is to track and provide instructions for reproducing the analyses of the Wester Redcedar Dieback Map project data.
The overall approach is to model empirical data collected by community scientists with ancillary environmental data (climate, topographic, and soils) to identify important predictors of western redcedar dieback.
The below bullets are questions or comments that should be resolved before final analyses
The data used in the below visualizations are described in the Data Wrangle folder.
## # A tibble: 11 × 2
## # Groups: field.tree.canopy.symptoms [11]
## field.tree.canopy.symptoms n
## <fct> <int>
## 1 Branch Dieback or 'Flagging' 19
## 2 Browning Canopy 19
## 3 Extra Cone Crop 2
## 4 Healthy 403
## 5 Multiple Symptoms (please list in Notes) 17
## 6 New Dead Top (red or brown needles still attached) 33
## 7 Old Dead Top (needles already gone) 83
## 8 Other (please describe in Notes) 8
## 9 Thinning Canopy 118
## 10 Tree is dead 37
## 11 Yellowing Canopy 10
## # A tibble: 5 × 2
## # Groups: field.tree.canopy.symptoms [5]
## field.tree.canopy.symptoms n
## <fct> <int>
## 1 Healthy 403
## 2 New Dead Top (red or brown needles still attached) 33
## 3 Old Dead Top (needles already gone) 83
## 4 Thinning Canopy 118
## 5 Tree is dead 37
## # A tibble: 2 × 2
## # Groups: field.tree.canopy.symptoms [2]
## field.tree.canopy.symptoms n
## <fct> <int>
## 1 Healthy 403
## 2 Unhealthy 346
## Warning: Removed 4 rows containing non-finite values (stat_boxplot).
## Warning: Removed 4 rows containing non-finite values (stat_boxplot).
## Warning: Removed 4 rows containing non-finite values (stat_boxplot).
## Warning: Removed 4 rows containing missing values (geom_point).
## `geom_smooth()` using method = 'loess' and formula 'y ~ x'
## Warning: Removed 4 rows containing non-finite values (stat_smooth).
## `geom_smooth()` using method = 'loess' and formula 'y ~ x'
## Warning: Removed 4 rows containing non-finite values (stat_smooth).
## `geom_smooth()` using method = 'loess' and formula 'y ~ x'
## Warning: Removed 4 rows containing non-finite values (stat_smooth).
## Warning: Removed 621 rows containing non-finite values (stat_boxplot).
## Warning: Removed 33 rows containing non-finite values (stat_boxplot).
## Warning: Removed 3 rows containing non-finite values (stat_boxplot).
## `geom_smooth()` using method = 'loess' and formula 'y ~ x'
## Warning: Removed 6 rows containing non-finite values (stat_smooth).
## Warning: Removed 6 rows containing non-finite values (stat_boxplot).
## Warning: Removed 688 rows containing non-finite values (stat_boxplot).
## Warning: Removed 38 rows containing non-finite values (stat_boxplot).
## Warning: Removed 4 rows containing non-finite values (stat_boxplot).
#### component_taxpartsize
## NULL
Water Table Depth - April - June - Minimum
## int [1:749] 45 23 NA NA NA NA 0 NA NA NA ...
## Warning: Removed 441 rows containing non-finite values (stat_boxplot).